Nabunturan is divided into 28 barangays, namely:
- Anislagan
- Antiquera
- Basak
- Bayabas
- Bukal
- Cabacungan
- Cabidianan
- Katipunan
- Libasan
- Linda
- Magading
- Magsaysay
- Mainit
- Manat
- Matilo
- Mipangi
- New Dauis
- New Sibonga
- Ogao
- Pangutosan
- Poblacion
- San Isidro
- San Roque
- San Vicente
- Santa Maria
- Santo Nino (Kao)
- Sasa
- Tagnocon
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